sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1Q81-A1706-A1705
X
>2QA4-01705-01704
X
>3F1F-A2444-A2443
X
>3OHZ-A2290-A2289
X
>3F1H-A2444-A2443
X
>3OI1-A2290-A2289
X
>3OHK-A2290-A2289
X
>3OHJ-A2290-A2289
X
>3OH7-A2290-A2289
X
>3OH5-A2290-A2289
X
</seq>
<hsp>
0 1:0.123748490142
0 2:0.928120400425
0 3:0.994554254386
0 4:0.930039261969
0 5:0.980088314106
0 6:0.986477937366
0 7:0.995891969227
0 8:0.977239847776
0 9:0.987277694853
1 2:0.940729093089
1 3:0.997502009904
1 4:0.942531461831
1 5:0.984006633606
1 6:0.991375403918
1 7:0.999999253188
1 8:0.981387622742
1 9:0.990785551619
2 3:0.194797248488
2 4:0.00946523524359
2 5:0.193449540316
2 6:0.175312619457
2 7:0.180099993836
2 8:0.168628598172
2 9:0.171807560866
3 4:0.196711237661
3 5:0.0243385042653
3 6:0.0417273524249
3 7:0.040673722136
3 8:0.0658725709874
3 9:0.0632796801888
4 5:0.195589980927
4 6:0.178294483257
4 7:0.182787980876
4 8:0.171117209886
4 9:0.174039725366
5 6:0.0471904404871
5 7:0.051623647641
5 8:0.059574387357
5 9:0.0624553895869
6 7:0.0161063959582
6 8:0.0747419050063
6 9:0.0741763130273
7 8:0.0789846308858
7 9:0.0757974060963
8 9:0.0164268015263
</hsp>