sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1O0B-B57-B56
X
>3U5B-2378-2377
X
>1EXD-B56-B55
X
>3U5B-21499-21498
X
>3U5D-11628-11627
X
>3U5F-61511-61510
X
>2ZZN-C58-C57
X
>1O0C-B57-B56
X
>2ZJR-X2266-X2265
X
>3CCJ-01247-01246
X
</seq>
<hsp>
0 1:0.0980893882415
0 2:0.151795192029
0 3:0.925098461433
0 4:0.0846821376401
0 5:0.939998266694
0 6:0.174089265972
0 7:0.0316055706284
0 8:0.0476216372759
0 9:0.142385465236
1 2:0.171907178748
1 3:0.939671905326
1 4:0.0633189190339
1 5:0.953190803331
1 6:0.170179657549
1 7:0.086023594183
1 8:0.0772503021637
1 9:0.115778510338
2 3:0.96495460982
2 4:0.133009677439
2 5:0.981477596489
2 6:0.0647903336495
2 7:0.159076953024
2 8:0.148269671702
2 9:0.0859053616742
3 4:0.962761420992
3 5:0.0283346106356
3 6:0.930029345365
3 7:0.910121598624
3 8:0.933868493904
3 9:0.984528622229
4 5:0.97703325029
4 6:0.147319473014
4 7:0.0861148536958
4 8:0.0486728689505
4 9:0.086528936631
5 6:0.94649268838
5 7:0.924860607468
5 8:0.948254212613
5 9:0.999999849772
6 7:0.172547241176
6 8:0.165424689872
6 9:0.0896925113483
7 8:0.0522669236478
7 9:0.142242432993
8 9:0.122784648178
</hsp>