sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X381-X27
X
>3CCE-01084-01083
X
>1QVG-01084-01083
X
>3U5F-61025-61024
X
>1QRU-B57-B56
X
>2UUA-A798-A797
X
>1XMQ-A798-A797
X
>2ZUE-B61-B60
X
>2ZUF-B61-B60
X
>2J00-V60-V59
X
</seq>
<hsp>
0 1:0.999999948718
0 2:0.98909596592
0 3:0.443630545662
0 4:0.991653162139
0 5:0.419500565932
0 6:0.422223487493
0 7:0.97608190653
0 8:0.967885428049
0 9:0.938646758857
1 2:0.0195950954344
1 3:0.714009621509
1 4:0.0524556678795
1 5:0.755963032328
1 6:0.760353696779
1 7:0.0384479742958
1 8:0.0524008055329
1 9:0.087323275854
2 3:0.703120566393
2 4:0.0593978730463
2 5:0.745035972272
2 6:0.749741528156
2 7:0.0431248517567
2 8:0.0537854406862
2 9:0.0831314098341
3 4:0.699503039377
3 5:0.0476884549492
3 6:0.0558614105162
3 7:0.690692399143
3 8:0.681337189634
3 9:0.653828408757
4 5:0.741668681086
4 6:0.745928128113
4 7:0.0398909215061
4 8:0.0359703929506
4 9:0.0647006794085
5 6:0.0231153015841
5 7:0.732489113001
5 8:0.723170357285
5 9:0.695353236838
6 7:0.736379455261
6 8:0.727163293904
6 9:0.699487146877
7 8:0.0183559652283
7 9:0.0546068770488
8 9:0.0382290872348
</hsp>