sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A2769-A2753
X
>3OHJ-A2694-A2678
X
>3OHK-A2694-A2678
X
>3OH5-A2694-A2678
X
>3U5F-6449-6448
X
>2J02-W54-W57
X
>1I9V-A54-A57
X
>3U5B-2452-2451
X
>3U5H-52160-52159
X
</seq>
<hsp>
0 1:0.0755445224111
0 2:0.0739874934444
0 3:0.0586988899648
0 4:0.946758111363
0 5:0.531106533984
0 6:0.588132340857
0 7:0.9698967761
0 8:0.947377353223
1 2:0.0069748373812
1 3:0.0729651180124
1 4:0.935700194882
1 5:0.526725707666
1 6:0.583829457753
1 7:0.960900016601
1 8:0.935427646221
2 3:0.0697193809109
2 4:0.938260898958
2 5:0.527722295984
2 6:0.585151838869
2 7:0.963607063153
2 8:0.936219390932
3 4:0.963573648515
3 5:0.526269211143
3 6:0.583748025156
3 7:0.988963914858
3 8:0.925526341164
4 5:0.826152764131
4 6:0.80479104307
4 7:0.0567397158028
4 8:0.97777813327
5 6:0.0841428936494
5 7:0.851036966046
5 8:0.848646870139
6 7:0.828237342514
6 8:0.804387001651
7 8:0.999999950395
</hsp>