sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1QU3-T36-T35
X
>2ZM5-C7-C6
X
>3SIU-F16-F15
X
>1QU2-T36-T35
X
>1FFY-T36-T35
X
>1QRT-B57-B56
X
>3U5H-51101-51100
X
>2BGG-Q6-Q5
X
</seq>
<hsp>
0 1:0.284727215282
0 2:0.128270492352
0 3:0.0883248315025
0 4:0.0883248315025
0 5:0.696328649918
0 6:0.715783378339
0 7:0.737548647542
1 2:0.392323498051
1 3:0.267345506364
1 4:0.267345506364
1 5:0.958016225918
1 6:0.977717026334
1 7:1.0
2 3:0.150988770821
2 4:0.150988770821
2 5:0.585849242709
2 6:0.603390156005
2 7:0.627763973992
3 4:0.0
3 5:0.725994445888
3 6:0.745809260918
3 7:0.770161681653
4 5:0.725994445888
4 6:0.745809260918
4 7:0.770161681653
5 6:0.0828307120011
5 7:0.0958100851325
6 7:0.0581804066638
</hsp>