sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3RW6-H40-H39
X
>3RW6-F40-F39
X
>1YHQ-02355-02354
X
>1YJ9-02355-02354
X
>1VQ7-02355-02354
X
>3CC2-02355-02354
X
>1VQ4-02355-02354
X
>3I56-02355-02354
X
</seq>
<hsp>
0 1:0.363974040866
0 2:0.660389179993
0 3:0.522416718342
0 4:0.552373412982
0 5:0.600608530278
0 6:0.544015466817
0 7:0.703525330202
1 2:0.957146119989
1 3:0.801601824502
1 4:0.879255328436
1 5:0.890164473829
1 6:0.859345098743
1 7:0.999983259768
2 3:0.222217139221
2 4:0.290433635665
2 5:0.10275958947
2 6:0.235920261426
2 7:0.190451529513
3 4:0.23165398534
3 5:0.172425827501
3 6:0.162847768055
3 7:0.206448630142
4 5:0.277243532802
4 6:0.0849617211517
4 7:0.245188617704
5 6:0.209204992131
5 7:0.207759916673
6 7:0.200294539114
</hsp>