sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1QVG-02128-02127
X
>3CCR-02128-02127
X
>3F1F-A1909-A1908
X
>3F1H-A1909-A1908
X
>3CCJ-02128-02127
X
>1NTA-A15-A14
X
</seq>
<hsp>
0 1:0.0997654496704
0 2:0.972352418365
0 3:0.972404808261
0 4:0.172896726011
0 5:0.117467474812
1 2:0.977116030285
1 3:0.977164287478
1 4:0.139990895138
1 5:0.131458202131
2 3:0.0112967031114
2 4:0.972688206486
2 5:0.999908557754
3 4:0.972097244973
3 5:1.0
4 5:0.147160968841
</hsp>