sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3PDR-A152-A151
X
>3PDR-X152-X151
X
>2QBZ-X144-X143
X
>2BNY-S7-S6
X
>1AQ3-S7-S6
X
>2BQ5-S9-S8
X
>2IZN-S6-S5
X
>1ZDI-R8-R7
X
>2IZN-R8-R7
X
>2BQ5-R10-R9
X
>1AQ4-S8-S7
X
>1ZDI-S7-S6
X
>2BNY-R8-R7
X
>1AQ4-R8-R7
X
>2ZJR-X1821-X1820
X
>1AQ3-R8-R7
X
</seq>
<hsp>
0 1:0.119227600109
0 2:0.241129947983
0 3:0.35840102929
0 4:0.587876913586
0 5:0.302769829466
0 6:0.496622862468
0 7:0.478127997218
0 8:0.458847298353
0 9:0.949537168996
0 10:0.515556290855
0 11:0.523881417721
0 12:0.25134286448
0 13:0.483662720952
0 14:0.571939129069
0 15:0.420530192358
1 2:0.191868815187
1 3:0.306637508262
1 4:0.579495065133
1 5:0.267375693978
1 6:0.499405614445
1 7:0.464084647367
1 8:0.467199579665
1 9:0.976283770675
1 10:0.510037422793
1 11:0.509583143392
1 12:0.204774326001
1 13:0.473350530537
1 14:0.650385256337
1 15:0.420525138182
2 3:0.265378339456
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2 6:0.571133729778
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3 4:0.494865710304
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3 6:0.412964522201
3 7:0.415936641282
3 8:0.360417138467
3 9:0.964892050197
3 10:0.413653549315
3 11:0.413394911854
3 12:0.340909070498
3 13:0.413409937213
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3 15:0.364689337637
4 5:0.412353362379
4 6:0.206009377048
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5 15:0.274043595147
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7 12:0.519706506889
7 13:0.0440729415264
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8 9:0.742209896893
8 10:0.135925627806
8 11:0.154986895524
8 12:0.516922659331
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8 14:0.455667622928
8 15:0.17165204308
9 10:0.719713778582
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10 11:0.0510076125906
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10 15:0.127553113073
11 12:0.555294255929
11 13:0.0717316650415
11 14:0.569823498223
11 15:0.152866642503
12 13:0.519818550226
12 14:0.700811003627
12 15:0.478013885348
13 14:0.557989524435
13 15:0.10952969559
14 15:0.547529249547
</hsp>