sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QA4-01706-01705
X
>1Q82-A1707-A1706
X
>3CD6-01707-01706
X
>3CCL-01707-01706
X
>3CCQ-01707-01706
X
>3CCS-01707-01706
X
>3R8N-A12-A11
X
>3CCR-01707-01706
X
>3KNH-A9-A8
X
>1EXD-B36-B35
X
</seq>
<hsp>
0 1:0.0370243110905
0 2:0.051661536365
0 3:0.0529415335155
0 4:0.0654981588869
0 5:0.0522022976898
0 6:0.859644570083
0 7:0.0734437705783
0 8:0.97885722791
0 9:0.0749534009151
1 2:0.0257259002911
1 3:0.0261950590795
1 4:0.04448600319
1 5:0.0328575740167
1 6:0.876946757
1 7:0.0653253212802
1 8:0.997517151372
1 9:0.084837550877
2 3:0.0126019005501
2 4:0.0296515748299
2 5:0.0406124583355
2 6:0.878369528461
2 7:0.06907310509
2 8:0.99856050997
2 9:0.0844527573034
3 4:0.0333755263965
3 5:0.0324001151018
3 6:0.875640138465
3 7:0.0597490056854
3 8:0.996046845618
3 9:0.091712181543
4 5:0.0493384076901
4 6:0.880874415415
4 7:0.0705946781446
4 8:0.999999347439
4 9:0.0819996716595
5 6:0.879839719647
5 7:0.0410034864448
5 8:0.999742406272
5 9:0.0976854901439
6 7:0.853112603896
6 8:0.160486551839
6 9:0.870731723249
7 8:0.971800746624
7 9:0.117786553595
8 9:0.988473795708
</hsp>