sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZH2-B18-B17
X
>2GIC-R27-R26
X
>2ZH8-B18-B17
X
>2DR8-B18-B17
X
>2ZH4-B18-B17
X
>2ZH1-B18-B17
X
>1M8V-S4-S3
X
>3OXM-B19-B18
X
>2ZH5-B18-B17
X
>2ZH3-B18-B17
X
</seq>
<hsp>
0 1:0.953938291736
0 2:0.0403631769183
0 3:0.0821465815685
0 4:0.0715863083938
0 5:0.0278824198233
0 6:0.550439529603
0 7:0.677468208314
0 8:0.059446407613
0 9:0.0729897461789
1 2:0.974447419597
1 3:0.947520221006
1 4:1.0
1 5:0.9620304268
1 6:0.466997618655
1 7:0.406591525199
1 8:0.986536980849
1 9:0.981953058592
2 3:0.0922659098363
2 4:0.0540030234717
2 5:0.0461543485032
2 6:0.575845166517
2 7:0.703336251629
2 8:0.0375363063925
2 9:0.0613701717516
3 4:0.0920917586982
3 5:0.0836661473722
3 6:0.555999629855
3 7:0.67909271337
3 8:0.0935103389915
3 9:0.0739164069137
4 5:0.0804768105594
4 6:0.604767002663
4 7:0.731984389962
4 8:0.0353144356186
4 9:0.0459765606839
5 6:0.560359536524
5 7:0.683688116274
5 8:0.0673545953543
5 9:0.0855756995689
6 7:0.213031428582
6 8:0.587218306659
6 9:0.58489410683
7 8:0.715525566904
7 9:0.715035572212
8 9:0.0464655454269
</hsp>