sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OWI-A18-A17
X
>2ZH9-B18-B17
X
>3OXB-A18-A17
X
>2ZH7-B18-B17
X
>3OXD-A18-A17
X
>3OWW-A18-A17
X
>3OXE-A18-A17
X
>3OXM-A18-A17
X
>3R8N-V59-V58
X
</seq>
<hsp>
0 1:0.789554143902
0 2:0.0448418725677
0 3:0.779610683444
0 4:0.0867039093787
0 5:0.027987427941
0 6:0.436380494043
0 7:0.416963204517
0 8:0.875503159128
1 2:0.754678560277
1 3:0.0353888508788
1 4:0.775150637869
1 5:0.778673534629
1 6:0.911764260028
1 7:0.841014734294
1 8:0.149472008212
2 3:0.744580001309
2 4:0.09710090218
2 5:0.0356254237933
2 6:0.445861105243
2 7:0.422474562355
2 8:0.838439597821
3 4:0.767339234746
3 5:0.768136716097
3 6:0.910611182369
3 7:0.841665292056
3 8:0.151347336988
4 5:0.102404675237
4 6:0.418799590439
4 7:0.391271938173
4 8:0.861138478258
5 6:0.442247124786
5 7:0.423549325561
5 8:0.864376035533
6 7:0.0930070084434
6 8:1.0
7 8:0.93294241438
</hsp>