sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2CV0-D58-D57
X
>2CV0-C58-C57
X
>2CV1-D58-D57
X
>2J00-W59-W58
X
>2VQE-A1257-A1254
X
>1M8V-O1-O0
X
</seq>
<hsp>
0 1:0.00924628878477
0 2:0.010776380743
0 3:0.142780310012
0 4:0.927218855449
0 5:0.515962636151
1 2:0.0135260310053
1 3:0.141874083063
1 4:0.923677985078
1 5:0.514583797537
2 3:0.136185588211
2 4:0.926865888386
2 5:0.51186462489
3 4:1.0
3 5:0.539838092592
4 5:0.6021651107
</hsp>