ClaRNA

Doublet Group distance statistics: 48735

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Distances from reference structure (by RMSD)

1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C5 A 0, 0.000, 0.004, 0.009, 0.009 max_d=0.009 avg_d=0.004 std_dev=0.004
C2 A 0, 0.000, 0.007, 0.015, 0.015 max_d=0.015 avg_d=0.007 std_dev=0.007
C1' A 0, 0.000, 0.008, 0.015, 0.015 max_d=0.015 avg_d=0.008 std_dev=0.008
C4 A 0, 0.000, 0.008, 0.016, 0.016 max_d=0.016 avg_d=0.008 std_dev=0.008
C6 A 0, 0.000, 0.008, 0.017, 0.017 max_d=0.017 avg_d=0.008 std_dev=0.008
N3 A 0, 0.000, 0.009, 0.018, 0.018 max_d=0.018 avg_d=0.009 std_dev=0.009
N1 A 0, 0.000, 0.017, 0.033, 0.033 max_d=0.033 avg_d=0.017 std_dev=0.017
O2 A 0, 0.000, 0.019, 0.037, 0.037 max_d=0.037 avg_d=0.019 std_dev=0.019
O4 A 0, 0.000, 0.032, 0.063, 0.063 max_d=0.063 avg_d=0.032 std_dev=0.032
OP2 B 0, 0.000, 0.531, 1.061, 1.061 max_d=1.061 avg_d=0.531 std_dev=0.531
OP1 B 0, 0.000, 0.593, 1.186, 1.186 max_d=1.186 avg_d=0.593 std_dev=0.593
P B 0, 0.000, 0.725, 1.449, 1.449 max_d=1.449 avg_d=0.725 std_dev=0.725
O4' A 0, 0.000, 1.331, 2.663, 2.663 max_d=2.663 avg_d=1.331 std_dev=1.331
C2' A 0, 0.000, 1.374, 2.748, 2.748 max_d=2.748 avg_d=1.374 std_dev=1.374
C4' A 0, 0.000, 1.690, 3.380, 3.380 max_d=3.380 avg_d=1.690 std_dev=1.690
O5' B 0, 0.000, 1.808, 3.616, 3.616 max_d=3.616 avg_d=1.808 std_dev=1.808
O2' A 0, 0.000, 1.820, 3.640, 3.640 max_d=3.640 avg_d=1.820 std_dev=1.820
C3' A 0, 0.000, 1.957, 3.915, 3.915 max_d=3.915 avg_d=1.957 std_dev=1.957
C5' B 0, 0.000, 2.182, 4.365, 4.365 max_d=4.365 avg_d=2.182 std_dev=2.182
O4' B 0, 0.000, 2.280, 4.560, 4.560 max_d=4.560 avg_d=2.280 std_dev=2.280
O3' A 0, 0.000, 2.417, 4.834, 4.834 max_d=4.834 avg_d=2.417 std_dev=2.417
C4' B 0, 0.000, 2.831, 5.662, 5.662 max_d=5.662 avg_d=2.831 std_dev=2.831
C6 B 0, 0.000, 2.919, 5.837, 5.837 max_d=5.837 avg_d=2.919 std_dev=2.919
C1' B 0, 0.000, 3.096, 6.192, 6.192 max_d=6.192 avg_d=3.096 std_dev=3.096
N1 B 0, 0.000, 3.096, 6.193, 6.193 max_d=6.193 avg_d=3.096 std_dev=3.096
C5' A 0, 0.000, 3.150, 6.301, 6.301 max_d=6.301 avg_d=3.150 std_dev=3.150
C5 B 0, 0.000, 3.674, 7.349, 7.349 max_d=7.349 avg_d=3.674 std_dev=3.674
O5' A 0, 0.000, 3.715, 7.430, 7.430 max_d=7.430 avg_d=3.715 std_dev=3.715
C2 B 0, 0.000, 3.809, 7.617, 7.617 max_d=7.617 avg_d=3.809 std_dev=3.809
C3' B 0, 0.000, 3.976, 7.952, 7.952 max_d=7.952 avg_d=3.976 std_dev=3.976
O2 B 0, 0.000, 4.102, 8.204, 8.204 max_d=8.204 avg_d=4.102 std_dev=4.102
C2' B 0, 0.000, 4.286, 8.572, 8.572 max_d=8.572 avg_d=4.286 std_dev=4.286
N3 B 0, 0.000, 4.481, 8.962, 8.962 max_d=8.962 avg_d=4.481 std_dev=4.481
C4 B 0, 0.000, 4.580, 9.161, 9.161 max_d=9.161 avg_d=4.580 std_dev=4.580
O3' B 0, 0.000, 4.787, 9.574, 9.574 max_d=9.574 avg_d=4.787 std_dev=4.787
O2' B 0, 0.000, 5.087, 10.174, 10.174 max_d=10.174 avg_d=5.087 std_dev=5.087
P A 0, 0.000, 5.126, 10.252, 10.252 max_d=10.252 avg_d=5.126 std_dev=5.126
O4 B 0, 0.000, 5.569, 11.137, 11.137 max_d=11.137 avg_d=5.569 std_dev=5.569
OP1 A 0, 0.000, 5.612, 11.223, 11.223 max_d=11.223 avg_d=5.612 std_dev=5.612
OP2 A 0, 0.000, 5.757, 11.514, 11.514 max_d=11.514 avg_d=5.757 std_dev=5.757

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.03 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.12 0.48 0.32 0.26
C2 0.00 0.00 0.13 0.25 0.00 0.24 0.00 0.27 0.00 0.01 0.00 0.00 0.01 0.21 0.01 0.20 0.00 0.43 0.50 0.27
C2' 0.00 0.13 0.00 0.01 0.01 0.00 0.09 0.03 0.12 0.00 0.10 0.25 0.01 0.02 0.02 0.00 0.09 0.44 0.21 0.18
C3' 0.02 0.25 0.01 0.00 0.13 0.00 0.41 0.03 0.46 0.09 0.14 0.61 0.01 0.00 0.12 0.01 0.06 0.32 0.12 0.10
C4 0.00 0.00 0.01 0.13 0.00 0.11 0.00 0.28 0.01 0.01 0.00 0.00 0.11 0.11 0.00 0.02 0.53 1.34 1.20 1.02
C4' 0.01 0.24 0.00 0.00 0.11 0.00 0.35 0.00 0.39 0.06 0.13 0.54 0.02 0.02 0.10 0.00 0.00 0.13 0.02 0.00
C5 0.00 0.00 0.09 0.41 0.00 0.35 0.00 0.66 0.00 0.00 0.00 0.00 0.16 0.36 0.01 0.17 0.84 1.81 1.41 1.36
C5' 0.03 0.27 0.03 0.03 0.28 0.00 0.66 0.00 0.67 0.16 0.11 0.73 0.03 0.02 0.28 0.01 0.00 0.02 0.01 0.00
C6 0.00 0.00 0.12 0.46 0.01 0.39 0.00 0.67 0.00 0.00 0.00 0.01 0.16 0.38 0.00 0.22 0.79 1.61 1.18 1.19
N1 0.01 0.01 0.00 0.09 0.01 0.06 0.00 0.16 0.00 0.00 0.01 0.01 0.06 0.07 0.01 0.01 0.33 0.87 0.70 0.60
N3 0.00 0.00 0.10 0.14 0.00 0.13 0.00 0.11 0.00 0.01 0.00 0.00 0.04 0.12 0.01 0.13 0.17 0.73 0.79 0.54
O2 0.01 0.00 0.25 0.61 0.00 0.54 0.00 0.73 0.01 0.01 0.00 0.00 0.10 0.51 0.00 0.38 0.41 0.19 0.08 0.23
O2' 0.01 0.01 0.01 0.01 0.11 0.02 0.16 0.03 0.16 0.06 0.04 0.10 0.00 0.02 0.12 0.05 0.02 0.29 0.03 0.02
O3' 0.01 0.21 0.02 0.00 0.11 0.02 0.36 0.02 0.38 0.07 0.12 0.51 0.02 0.00 0.10 0.02 0.04 0.11 0.11 0.10
O4 0.00 0.01 0.02 0.12 0.00 0.10 0.01 0.28 0.00 0.01 0.01 0.00 0.12 0.10 0.00 0.01 0.55 1.42 1.31 1.10
O4' 0.00 0.20 0.00 0.01 0.02 0.00 0.17 0.01 0.22 0.01 0.13 0.38 0.05 0.02 0.01 0.00 0.11 0.30 0.27 0.20
O5' 0.12 0.00 0.09 0.06 0.53 0.00 0.84 0.00 0.79 0.33 0.17 0.41 0.02 0.04 0.55 0.11 0.00 0.01 0.01 0.01
OP1 0.48 0.43 0.44 0.32 1.34 0.13 1.81 0.02 1.61 0.87 0.73 0.19 0.29 0.11 1.42 0.30 0.01 0.00 0.01 0.00
OP2 0.32 0.50 0.21 0.12 1.20 0.02 1.41 0.01 1.18 0.70 0.79 0.08 0.03 0.11 1.31 0.27 0.01 0.01 0.00 0.00
P 0.26 0.27 0.18 0.10 1.02 0.00 1.36 0.00 1.19 0.60 0.54 0.23 0.02 0.10 1.10 0.20 0.01 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.39 0.75 0.52 0.62 1.70 0.99 1.25 0.97 0.55 0.33 1.39 0.58 0.58 0.60 2.31 0.83 1.02 0.10 0.18 0.51
C2 0.14 1.08 0.22 0.41 2.17 0.86 1.69 0.78 0.93 0.65 1.79 0.85 0.29 0.54 2.83 0.67 1.00 0.19 0.19 0.50
C2' 0.15 0.91 0.28 0.35 1.86 0.69 1.48 0.62 0.81 0.55 1.52 0.71 0.32 0.35 2.44 0.55 0.70 0.24 0.00 0.20
C3' 0.05 1.07 0.08 0.14 2.02 0.43 1.68 0.32 1.03 0.74 1.67 0.85 0.13 0.13 2.57 0.31 0.30 0.83 0.46 0.29
C4 0.02 1.09 0.04 0.07 2.10 0.61 1.72 0.54 1.02 0.73 1.72 0.86 0.01 0.17 2.64 0.52 0.87 0.24 0.20 0.47
C4' 0.25 0.84 0.38 0.45 1.78 0.75 1.37 0.68 0.71 0.46 1.46 0.65 0.46 0.41 2.34 0.62 0.56 0.60 0.33 0.05
C5 0.18 0.77 0.17 0.17 1.61 0.68 1.28 0.67 0.67 0.44 1.30 0.59 0.17 0.13 2.08 0.65 0.88 0.17 0.21 0.50
C5' 0.02 1.03 0.13 0.19 1.96 0.46 1.60 0.35 0.96 0.68 1.63 0.82 0.22 0.15 2.49 0.34 0.13 1.17 0.79 0.54
C6 0.32 0.69 0.36 0.38 1.54 0.82 1.16 0.83 0.54 0.32 1.24 0.52 0.37 0.31 2.04 0.75 0.93 0.11 0.19 0.51
N1 0.29 0.84 0.37 0.48 1.81 0.90 1.38 0.87 0.68 0.43 1.48 0.65 0.42 0.49 2.41 0.76 1.00 0.13 0.19 0.51
N3 0.01 1.20 0.03 0.23 2.31 0.73 1.85 0.63 1.09 0.79 1.91 0.96 0.09 0.40 2.97 0.56 0.94 0.24 0.20 0.48
O2 0.12 1.17 0.23 0.48 2.31 0.91 1.79 0.80 1.00 0.71 1.92 0.94 0.32 0.66 3.03 0.66 1.02 0.20 0.19 0.50
O2' 0.36 0.71 0.52 0.57 1.61 0.91 1.18 0.89 0.52 0.31 1.31 0.54 0.56 0.54 2.19 0.77 0.98 0.16 0.34 0.56
O3' 0.06 1.06 0.09 0.13 1.98 0.39 1.64 0.29 1.01 0.73 1.64 0.84 0.14 0.10 2.52 0.27 0.25 0.88 0.45 0.32
O4 0.23 1.27 0.31 0.19 2.30 0.40 1.94 0.29 1.24 0.94 1.89 1.01 0.26 0.01 2.80 0.36 0.72 0.28 0.18 0.39
O4' 0.47 0.69 0.59 0.69 1.65 1.04 1.19 1.00 0.50 0.27 1.34 0.51 0.66 0.66 2.24 0.88 0.92 0.15 0.03 0.33
O5' 0.01 1.11 0.11 0.18 2.00 0.44 1.58 0.37 0.94 0.72 1.71 0.93 0.22 0.11 2.53 0.31 0.08 1.17 0.93 0.58
OP1 1.12 2.11 1.02 0.96 2.97 0.79 2.67 0.94 2.09 1.81 2.66 1.87 0.88 0.99 3.42 0.89 1.33 2.71 2.30 2.04
OP2 0.63 1.74 0.52 0.45 2.49 0.21 2.04 0.22 1.45 1.31 2.30 1.61 0.38 0.58 2.97 0.34 0.64 1.78 1.66 1.23
P 0.64 1.69 0.54 0.48 2.51 0.26 2.12 0.33 1.53 1.32 2.25 1.51 0.42 0.58 2.98 0.37 0.70 1.98 1.68 1.35

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.00 0.01 0.00 0.02 0.03 0.02 0.00 0.00 0.04 0.01 0.25 0.01 0.00 0.09 0.86 0.14 0.24
C2 0.01 0.00 0.20 0.37 0.00 0.16 0.01 0.30 0.01 0.01 0.00 0.00 0.12 0.06 0.00 0.07 0.16 0.80 0.53 0.00
C2' 0.00 0.20 0.00 0.00 0.02 0.01 0.12 0.14 0.17 0.02 0.15 0.35 0.00 0.02 0.04 0.01 0.01 0.64 0.30 0.14
C3' 0.00 0.37 0.00 0.00 0.46 0.00 0.37 0.01 0.28 0.27 0.45 0.33 0.00 0.00 0.50 0.00 0.26 0.10 0.57 0.22
C4 0.01 0.00 0.02 0.46 0.00 0.28 0.00 0.50 0.00 0.01 0.00 0.00 0.30 0.28 0.00 0.02 0.40 0.69 0.95 0.27
C4' 0.00 0.16 0.01 0.00 0.28 0.00 0.31 0.01 0.27 0.18 0.23 0.09 0.21 0.03 0.31 0.00 0.01 0.38 0.12 0.08
C5 0.02 0.01 0.12 0.37 0.00 0.31 0.00 0.53 0.00 0.01 0.01 0.01 0.35 0.26 0.00 0.04 0.41 0.72 0.93 0.27
C5' 0.03 0.30 0.14 0.01 0.50 0.01 0.53 0.00 0.44 0.29 0.41 0.21 0.04 0.08 0.54 0.01 0.01 0.31 0.23 0.01
C6 0.02 0.01 0.17 0.28 0.00 0.27 0.00 0.44 0.00 0.00 0.01 0.01 0.31 0.14 0.00 0.07 0.29 0.82 0.66 0.10
N1 0.00 0.01 0.02 0.27 0.01 0.18 0.01 0.29 0.00 0.00 0.00 0.02 0.18 0.02 0.01 0.00 0.14 0.84 0.46 0.04
N3 0.00 0.00 0.15 0.45 0.00 0.23 0.01 0.41 0.01 0.00 0.00 0.01 0.21 0.20 0.00 0.06 0.29 0.75 0.76 0.14
O2 0.04 0.00 0.35 0.33 0.00 0.09 0.01 0.21 0.01 0.02 0.01 0.00 0.04 0.04 0.01 0.10 0.07 0.80 0.40 0.07
O2' 0.01 0.12 0.00 0.00 0.30 0.21 0.35 0.04 0.31 0.18 0.21 0.04 0.00 0.02 0.32 0.24 0.21 0.45 0.38 0.02
O3' 0.25 0.06 0.02 0.00 0.28 0.03 0.26 0.08 0.14 0.02 0.20 0.04 0.02 0.00 0.35 0.17 0.45 0.30 0.68 0.45
O4 0.01 0.00 0.04 0.50 0.00 0.31 0.00 0.54 0.00 0.01 0.00 0.01 0.32 0.35 0.00 0.03 0.46 0.60 1.08 0.36
O4' 0.00 0.07 0.01 0.00 0.02 0.00 0.04 0.01 0.07 0.00 0.06 0.10 0.24 0.17 0.03 0.00 0.26 0.92 0.17 0.41
O5' 0.09 0.16 0.01 0.26 0.40 0.01 0.41 0.01 0.29 0.14 0.29 0.07 0.21 0.45 0.46 0.26 0.00 0.00 0.01 0.01
OP1 0.86 0.80 0.64 0.10 0.69 0.38 0.72 0.31 0.82 0.84 0.75 0.80 0.45 0.30 0.60 0.92 0.00 0.00 0.01 0.01
OP2 0.14 0.53 0.30 0.57 0.95 0.12 0.93 0.23 0.66 0.46 0.76 0.40 0.38 0.68 1.08 0.17 0.01 0.01 0.00 0.01
P 0.24 0.00 0.14 0.22 0.27 0.08 0.27 0.01 0.10 0.04 0.14 0.07 0.02 0.45 0.36 0.41 0.01 0.01 0.01 0.00