sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QA4-01706-01709
X
>3CCR-01707-01710
X
>3I56-02728-02706
X
>3U5H-51862-51933
X
>2J03-A1621-A1689
X
>3CCJ-01938-01941
X
>2ZJR-X1599-X1657
X
>3OH7-A1621-A1689
X
>3OH5-A1621-A1689
X
>3OHZ-A1621-A1689
X
>3F1F-A1699-A1767
X
>3F1H-A1699-A1767
X
</seq>
<hsp>
0 1:0.0610383124773
0 2:0.996609811985
0 3:0.643956745629
0 4:0.613553517233
0 5:0.999999763059
0 6:0.659545875242
0 7:0.634797101256
0 8:0.635137515582
0 9:0.612930300087
0 10:0.635002701464
0 11:0.637073608098
1 2:0.953248634742
1 3:0.646837114517
1 4:0.62397442715
1 5:0.97747424453
1 6:0.663844515935
1 7:0.64134906629
1 8:0.642231457572
1 9:0.620143613725
1 10:0.644072058966
1 11:0.646520350157
2 3:0.926964739558
2 4:0.972842837466
2 5:0.644708952969
2 6:0.932336663349
2 7:0.943480478988
2 8:0.947170214632
2 9:0.944617246705
2 10:0.979489412727
2 11:0.983070821967
3 4:0.0916087888588
3 5:0.694834730958
3 6:0.0411618934058
3 7:0.0683553704071
3 8:0.0682079875542
3 9:0.065867219616
3 10:0.0872740127368
3 11:0.0868884313621
4 5:0.731423209799
4 6:0.0818443333663
4 7:0.0547280502658
4 8:0.050525098362
4 9:0.0519544651772
4 10:0.0445178833588
4 11:0.0430951764363
5 6:0.690453853861
5 7:0.699784295526
5 8:0.704780137002
5 9:0.723402158883
5 10:0.716994554934
5 11:0.720798201592
6 7:0.0447607128519
6 8:0.0452493040663
6 9:0.0650493703484
6 10:0.078656406358
6 11:0.0789238766129
7 8:0.0111747023285
7 9:0.0515531224891
7 10:0.0587133605703
7 11:0.0600702570021
8 9:0.0457376714679
8 10:0.0590581022252
8 11:0.0591680977928
9 10:0.0746793611913
9 11:0.0720809323824
10 11:0.00880427614231
</hsp>