sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2CV0-D58-D17
X
>2DU3-D58-D17
X
>1G59-D58-D17
X
>2CV2-D58-D17
X
>1N77-C58-C17
X
>2DXI-C58-C17
X
>1N77-D58-D17
X
>1N78-C58-C17
X
>2DXI-D58-D17
X
>1N78-D58-D17
X
</seq>
<hsp>
0 1:0.824391851424
0 2:0.766640587365
0 3:0.332927884576
0 4:0.619390239593
0 5:0.354978840285
0 6:0.568897307018
0 7:0.444917261084
0 8:0.473445328837
0 9:0.396543580368
1 2:0.999999139362
1 3:0.80105751665
1 4:0.686070163621
1 5:0.72789616587
1 6:0.726314532762
1 7:0.696301932478
1 8:0.77706069943
1 9:0.762327622406
2 3:0.676571517995
2 4:0.574279735787
2 5:0.50928983005
2 6:0.42817787735
2 7:0.530018183795
2 8:0.342972353777
2 9:0.554774926251
3 4:0.419017812381
3 5:0.311078187712
3 6:0.40448159338
3 7:0.312176634554
3 8:0.405688695192
3 9:0.236817687806
4 5:0.324485671348
4 6:0.174639073588
4 7:0.231694594756
4 8:0.40544588665
4 9:0.288401602718
5 6:0.251491197013
5 7:0.128818262378
5 8:0.241247966522
5 9:0.14833604768
6 7:0.19917891774
6 8:0.291793391843
6 9:0.24380966468
7 8:0.289711867252
7 9:0.109905207706
8 9:0.32022206996
</hsp>