sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHY-A843-A827
X
>3OI0-A843-A827
X
>3KNI-A1620-A1688
X
>2J02-A843-A827
X
>3OH7-B39-B43
X
>3OH5-B39-B43
X
>3CCR-938-942
X
>3CD6-938-942
X
>1YJN-938-942
X
>3G71-938-942
X
</seq>
<hsp>
0 1:0.00913832186855
0 2:0.999685403287
0 3:0.0694872980124
0 4:0.797947966232
0 5:0.79788065878
0 6:0.796808297657
0 7:0.786771229541
0 8:0.778175279374
0 9:0.785004135618
1 2:1.0
1 3:0.0646752192854
1 4:0.795773920267
1 5:0.795723299206
1 6:0.794882347016
1 7:0.784823740869
1 8:0.776242044719
1 9:0.783110621084
2 3:0.986866196545
2 4:0.585831704657
2 5:0.586749080204
2 6:0.665470352109
2 7:0.656451919581
2 8:0.647103328027
2 9:0.662464357468
3 4:0.771162511534
3 5:0.771291636962
3 6:0.771957594765
3 7:0.762619491314
3 8:0.754469778344
3 9:0.762083568678
4 5:0.00540623416794
4 6:0.151008633498
4 7:0.147836183414
4 8:0.15666792535
4 9:0.170828623569
5 6:0.147832395938
5 7:0.144977934027
5 8:0.153981306468
5 9:0.167717650133
6 7:0.0435285467878
6 8:0.060096675562
6 9:0.0562273797553
7 8:0.0271794032758
7 9:0.0282860165872
8 9:0.0286107025887
</hsp>