sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-B39-B43
X
>2J02-A1068-A1071
X
>2J03-B39-B43
X
>3OHJ-B39-B43
X
>3R8N-A1089-A1092
X
>3KNH-A1059-A1062
X
>3OHK-A1842-A1845
X
>3OHJ-A1842-A1845
X
</seq>
<hsp>
0 1:0.609596227696
0 2:0.00277554614943
0 3:0.0450014371237
0 4:0.598101530104
0 5:0.624269392032
0 6:0.474045838191
0 7:0.474067838762
1 2:0.610202558365
1 3:0.630638465084
1 4:0.0654602116959
1 5:0.0984912148391
1 6:0.996787023618
1 7:0.995825852505
2 3:0.0450860768946
2 4:0.59873603153
2 5:0.624887942703
2 6:0.474269773249
2 7:0.47428419856
3 4:0.615527842563
3 5:0.641899963665
3 6:0.452649615892
3 7:0.45274458052
4 5:0.0723958977715
4 6:0.985102965125
4 7:0.984184730675
5 6:0.999999427663
5 7:0.998860159076
6 7:0.00389836797892
</hsp>