sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FJG-A843-A827
X
>1N32-A843-A827
X
>2VQF-A843-A827
X
>3MJB-A12-A15
X
>3R8T-B38-B42
X
>3OI1-A1842-A1845
X
>3OHZ-A1842-A1845
X
>2QA4-01145-01148
X
</seq>
<hsp>
0 1:0.0415382742191
0 2:0.0170146432467
0 3:0.618143967943
0 4:0.617023189185
0 5:0.979159337802
0 6:0.978008577651
0 7:0.863784346308
1 2:0.0299173321026
1 3:0.626571070388
1 4:0.616769105661
1 5:0.999999590547
1 6:0.998792809244
1 7:0.880120629369
2 3:0.618849374913
2 4:0.620343826104
2 5:0.985088958765
2 6:0.983952057714
2 7:0.868465078026
3 4:0.647894428875
3 5:0.700117273889
3 6:0.697534916651
3 7:0.56595272309
4 5:0.777245604299
4 6:0.776174651738
4 7:0.733217972741
5 6:0.00800836118089
5 7:0.284334847222
6 7:0.282289797524
</hsp>