sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QA4-02078-02104
X
>2VQE-A539-A18
X
>2VQF-A539-A18
X
>1FJG-A539-A18
X
>1N32-A539-A18
X
>1VQN-0822-02485
X
>1VQL-0822-02485
X
>1XMQ-A539-A18
X
>2UUB-A539-A18
X
>2UUA-A539-A18
X
>1VQM-0822-02485
X
>2UXC-A539-A18
X
>3F1G-A539-A18
X
>3F1E-A539-A18
X
>1FG0-A70-A96
X
>1FFK-02032-02058
X
</seq>
<hsp>
0 1:0.22163539382
0 2:0.235971016503
0 3:0.193114060792
0 4:0.214798241758
0 5:0.948244418452
0 6:0.993710341219
0 7:0.22814553967
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0 12:0.128175732885
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0 15:0.0640364332589
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1 11:0.0311354958053
1 12:0.110850900139
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1 15:0.207953968153
2 3:0.0720668809916
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3 15:0.172973062583
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12 13:0.00559228679756
12 14:0.124555882496
12 15:0.110782629538
13 14:0.121916411439
13 15:0.107843031414
14 15:0.0234529353176
</hsp>