sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YJW-01464-01454
X
>1VQP-01157-01160
X
>1YIT-01464-01454
X
>1VQM-01157-01160
X
>1VQ6-01464-01454
X
>1YIJ-01464-01454
X
>2OTJ-01464-01454
X
>3CC2-01157-01160
X
>2ZJR-X2567-X458
X
>1Q81-A1157-A1160
X
</seq>
<hsp>
0 1:0.449751530747
0 2:0.0666821584717
0 3:0.480812991003
0 4:0.0835829913936
0 5:0.0789620446704
0 6:0.0838963739158
0 7:0.500603958821
0 8:0.87530244838
0 9:0.496646724616
1 2:0.487760557083
1 3:0.0534579955038
1 4:0.474813380186
1 5:0.503906831121
1 6:0.470311963855
1 7:0.143044862403
1 8:0.990323740758
1 9:0.192717501447
2 3:0.51808118489
2 4:0.0751550702779
2 5:0.0401823912288
2 6:0.0872102827582
2 7:0.537378946401
2 8:0.88949134152
2 9:0.532144899587
3 4:0.499832486061
3 5:0.53323038502
3 6:0.495002003998
3 7:0.110629088391
3 8:0.999998030697
3 9:0.180890302577
4 5:0.0812553920567
4 6:0.0219674611228
4 7:0.506118994553
4 8:0.861224566691
4 9:0.498282924831
5 6:0.0889675315696
5 7:0.553574759287
5 8:0.912736672043
5 9:0.546137472922
6 7:0.500046671164
6 8:0.859648928828
6 9:0.490837867913
7 8:0.948054963807
7 9:0.112841133457
8 9:0.962906436531
</hsp>