sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A2764-A547
X
>3F1H-A2764-A547
X
>2QA4-01156-01159
X
>3R8S-A1389-A1379
X
>2UUB-Y3-Y6
X
>3R8T-A713-A716
X
>2UUA-Y4-Y7
X
>1MMS-D43-D46
X
>1MMS-C43-C46
X
</seq>
<hsp>
0 1:0.0123143703505
0 2:0.930467628367
0 3:0.920468610845
0 4:1.0
0 5:0.931924416391
0 6:0.996909375843
0 7:0.948490169211
0 8:0.944744603842
1 2:0.921878208413
1 3:0.911229787368
1 4:0.992176983945
1 5:0.923524227468
1 6:0.988850900384
1 7:0.939815374929
1 8:0.93633206441
2 3:0.314268950862
2 4:0.146897134482
2 5:0.0948735493504
2 6:0.131966474513
2 7:0.0694827569417
2 8:0.0805178990999
3 4:0.414520141664
3 5:0.358401162025
3 6:0.412966298413
3 7:0.336604594843
3 8:0.363386334658
4 5:0.1672986828
4 6:0.059617593756
4 7:0.161898798525
4 8:0.152126050264
5 6:0.13413629444
5 7:0.0810855822516
5 8:0.0539298015148
6 7:0.124244521813
6 8:0.115623724693
7 8:0.0451693452674
</hsp>