sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2771-A526
X
>3KNI-A2685-A540
X
>3R8S-A2772-A526
X
>3U5D-11550-11540
X
>3U5H-51556-51546
X
>3CCJ-01157-01160
X
>1YIJ-01157-01160
X
>1YI2-01157-01160
X
</seq>
<hsp>
0 1:0.561990823703
0 2:0.0566625342708
0 3:0.935468734537
0 4:0.998276506782
0 5:0.911168256663
0 6:0.894704962239
0 7:0.90691691588
1 2:0.558337225059
1 3:0.928499104005
1 4:0.977704262051
1 5:0.898388091667
1 6:0.855058165629
1 7:0.856241595789
2 3:0.936880030166
2 4:1.0
2 5:0.905710753096
2 6:0.888487957078
2 7:0.901050620183
3 4:0.0751576369128
3 5:0.393102032372
3 6:0.445638697222
3 7:0.425630109935
4 5:0.423626598969
4 6:0.474353112622
4 7:0.452213054755
5 6:0.108395408359
5 7:0.109712876343
6 7:0.0332707468582
</hsp>