sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1Y39-D43-D46
X
>3CCR-01554-01557
X
>3CCJ-01554-01557
X
>2VQF-A74-A77
X
>2UUB-A929-A932
X
>3R8O-A462-A465
X
>2VQE-A74-A77
X
>3U5B-2331-2334
X
>2CKY-A55-A58
X
>3OHJ-A1340-A1343
X
>3OHK-A1340-A1343
X
>3R8S-A567-A570
X
>3OH5-A1340-A1343
X
>3OH7-A1340-A1343
X
>3CCS-01554-01557
X
>1N32-A74-A77
X
</seq>
<hsp>
0 1:0.148734967765
0 2:0.131843799691
0 3:0.210289471789
0 4:0.398205231927
0 5:0.832275117549
0 6:0.210644096171
0 7:0.348878448707
0 8:0.1594626816
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0 11:0.22348105699
0 12:0.406430539866
0 13:0.41133965859
0 14:0.153911422859
0 15:0.186089264327
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1 10:0.306925077582
1 11:0.267875873823
1 12:0.304121495782
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1 14:0.0275787912379
1 15:0.111279876877
2 3:0.159716148489
2 4:0.424033830853
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3 14:0.208363974709
3 15:0.124769150991
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5 13:1.0
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7 11:0.240283708313
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8 9:0.454509071835
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8 12:0.451481288192
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8 14:0.20204248596
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9 11:0.480005617655
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9 13:0.0219085003471
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10 11:0.482931054981
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10 13:0.0249560994526
10 14:0.301582874118
10 15:0.364398975053
11 12:0.475492374849
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12 13:0.00776110067641
12 14:0.299248444306
12 15:0.364428035667
13 14:0.303883295981
13 15:0.369599356232
14 15:0.107963422474
</hsp>