sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHY-A1478-A1494
X
>3CCJ-01465-01406
X
>3OI0-A1478-A1494
X
>3R8N-A1504-A1520
X
>2UUA-A1478-A1494
X
>2UUB-A1478-A1494
X
>1N32-A1478-A1494
X
>2UXC-A1478-A1494
X
>2VQF-A1478-A1494
X
>3U5F-61763-61779
X
>2VQE-A1478-A1494
X
>1FJG-A1478-A1494
X
</seq>
<hsp>
0 1:0.977697180428
0 2:0.0173591933222
0 3:0.089580590681
0 4:0.0799488704007
0 5:0.0713392860194
0 6:0.103832490121
0 7:0.101930790704
0 8:0.104197348835
0 9:0.104399273094
0 10:0.0747032894258
0 11:0.0933988070975
1 2:0.970576313405
1 3:0.987334842337
1 4:0.972139651617
1 5:0.974902577169
1 6:0.999997490366
1 7:0.992611463835
1 8:0.994856996561
1 9:0.970862795985
1 10:0.98267995773
1 11:0.968291520331
2 3:0.102680765964
2 4:0.0900738286641
2 5:0.0783202332832
2 6:0.115167343597
2 7:0.112923682249
2 8:0.115128524046
2 9:0.107775494334
2 10:0.0807946949716
2 11:0.10024922933
3 4:0.0364537372883
3 5:0.0533915816681
3 6:0.0354414090049
3 7:0.0403546911951
3 8:0.0508205799203
3 9:0.0897189386681
3 10:0.0665036860098
3 11:0.0595191498333
4 5:0.0269596662503
4 6:0.0406502746021
4 7:0.042540021288
4 8:0.0421423712424
4 9:0.0612822367733
4 10:0.0395747427925
4 11:0.0419173700195
5 6:0.0503507973946
5 7:0.0522809857395
5 8:0.0556559672839
5 9:0.0568324924766
5 10:0.0285522480077
5 11:0.0422199607258
6 7:0.0268961934498
6 8:0.0329764631771
6 9:0.0738758155628
6 10:0.0552467736559
6 11:0.0481208550219
7 8:0.0410981736419
7 9:0.0700966982767
7 10:0.0557060321643
7 11:0.0454693871911
8 9:0.0653507953121
8 10:0.0477739177487
8 11:0.0419464475346
9 10:0.0414285482079
9 11:0.058390187762
10 11:0.038835702165
</hsp>