sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A869-A853
X
>3KNK-A1345-A1348
X
>3F4H-Y18-X38
X
>3R8T-A1384-A1387
X
>3F2Q-X71-X38
X
>2YIE-Z18-X38
X
</seq>
<hsp>
0 1:1.0
0 2:0.73426330426
0 3:0.947273839054
0 4:0.742208790222
0 5:0.74898979799
1 2:0.971654042934
1 3:0.162504378141
1 4:0.962541928814
1 5:0.976403969537
2 3:0.94895384637
2 4:0.0589762924911
2 5:0.0765485031977
3 4:0.942486902718
3 5:0.957165395705
4 5:0.0459070471708
</hsp>