sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A2029-A2034
X
>3EGZ-B7-B55
X
>3SUH-X59-X25
X
>3PDR-A31-A124
X
>3SUX-X59-X25
X
>3SD3-A54-A22
X
</seq>
<hsp>
0 1:0.416963208895
0 2:0.745655071443
0 3:1.0
0 4:0.664064319303
0 5:0.786660852687
1 2:0.449771150504
1 3:0.753947080568
1 4:0.405330730703
1 5:0.567114865831
2 3:0.367649330379
2 4:0.156315364999
2 5:0.352877130465
3 4:0.403619599401
3 5:0.372138876724
4 5:0.257142879971
</hsp>