sequences=13
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A494-A518
X
>2J03-A494-A518
X
>3F1H-A501-A525
X
>3F1F-A501-A525
X
>3CCR-0474-0499
X
>3CME-0474-0499
X
>3R8S-A479-A504
X
>1K8A-A474-A499
X
>1YIJ-0474-0499
X
>3U5D-1372-1396
X
>3U5H-5372-5396
X
>3CD6-0474-0499
X
>3CCE-0474-0499
X
</seq>
<hsp>
0 1:0.0647252132009
0 2:0.845326722213
0 3:0.830082801766
0 4:0.935179071358
0 5:0.978831740577
0 6:1.0
0 7:0.880123826355
0 8:0.885028509752
0 9:0.60912090114
0 10:0.762656590333
0 11:0.942346641609
0 12:0.939769060206
1 2:0.825030657234
1 3:0.805320107965
1 4:0.906549457243
1 5:0.946139386032
1 6:0.978242609704
1 7:0.859472615894
1 8:0.865483357345
1 9:0.582876299318
1 10:0.726181332128
1 11:0.915775124696
1 12:0.911659786159
2 3:0.0410889712461
2 4:0.412236794498
2 5:0.540076411742
2 6:0.511924781785
2 7:0.508830826154
2 8:0.530681044893
2 9:0.430947434257
2 10:0.413028282239
2 11:0.556825896872
2 12:0.57809320662
3 4:0.410253869648
3 5:0.525796979041
3 6:0.500156680316
3 7:0.499844606026
3 8:0.523282971479
3 9:0.409109869227
3 10:0.386174114784
3 11:0.545240123417
3 12:0.569085131568
4 5:0.32038859742
4 6:0.533937666045
4 7:0.297452615755
4 8:0.294776194442
4 9:0.431327209702
4 10:0.328787887962
4 11:0.224522708574
4 12:0.246336035678
5 6:0.646782282202
5 7:0.318662268025
5 8:0.336146145374
5 9:0.559874982533
5 10:0.301049762993
5 11:0.300213161607
5 12:0.408232889221
6 7:0.605415010004
6 8:0.595390662597
6 9:0.554082511491
6 10:0.524282672284
6 11:0.53893921125
6 12:0.491874482119
7 8:0.105308601729
7 9:0.401307321098
7 10:0.309790629858
7 11:0.219652982511
7 12:0.310870949582
8 9:0.423687056681
8 10:0.345410169001
8 11:0.194024038548
8 12:0.294845931584
9 10:0.316036020731
9 11:0.430383814784
9 12:0.445892557578
10 11:0.318362533044
10 12:0.380734650152
11 12:0.146664098147
</hsp>