sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A2199-A2212
X
>2J01-A2199-A2212
X
>2QA4-0473-0497
X
>3U5D-1371-1394
X
>3KNI-A2227-A2240
X
>3OHK-A493-A516
X
>3OHJ-A493-A516
X
>1FFK-0472-0496
X
>3F1H-A500-A523
X
>3F1H-A217-A451
X
>3F1F-A217-A451
X
</seq>
<hsp>
0 1:0.0408644940425
0 2:0.680866167261
0 3:0.68320841083
0 4:0.660948484852
0 5:0.629856238383
0 6:0.57314760419
0 7:0.741866479114
0 8:0.49739081532
0 9:0.840674114471
0 10:0.8426996301
1 2:0.68700077532
1 3:0.686701645097
1 4:0.662074186784
1 5:0.636189494543
1 6:0.578362251977
1 7:0.749691521365
1 8:0.511575476286
1 9:0.860602948728
1 10:0.862406738585
2 3:0.835145151144
2 4:0.496198476324
2 5:0.56706585091
2 6:0.548765458891
2 7:0.890218312594
2 8:0.617300188827
2 9:0.986318574359
2 10:0.999995382746
3 4:0.501554763522
3 5:0.345570661084
3 6:0.348175473523
3 7:0.406945830244
3 8:0.652727154063
3 9:0.793699404252
3 10:0.807754100711
4 5:0.330843699498
4 6:0.338566819756
4 7:0.533712221496
4 8:0.370781995142
4 9:0.688096602049
4 10:0.70058956441
5 6:0.0726648127302
5 7:0.392007056137
5 8:0.487545120823
5 9:0.693160511994
5 10:0.708745882655
6 7:0.435986999823
6 8:0.51016481971
6 9:0.750200145339
6 10:0.765157486831
7 8:0.535072097841
7 9:0.503549590924
7 10:0.518903072625
8 9:0.492798734023
8 10:0.500629339725
9 10:0.0323027993513
</hsp>