sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A1157-A1195
X
>3F1H-A1222-A1260
X
>3F1F-A1222-A1260
X
>3OH7-A1152-A1190
X
>3OI1-A1152-A1190
X
>3KNI-A1158-A1196
X
>2J03-A1152-A1190
X
>2J01-A1152-A1190
X
>3OHK-A1152-A1190
X
>3OHJ-A1152-A1190
X
</seq>
<hsp>
0 1:0.569052969522
0 2:0.55556706127
0 3:0.929860120788
0 4:0.921816697256
0 5:1.0
0 6:0.588650012919
0 7:0.588824372759
0 8:0.822198421753
0 9:0.826264949765
1 2:0.0495512947085
1 3:0.766480403209
1 4:0.664590404954
1 5:0.765557057769
1 6:0.467771233256
1 7:0.470390682736
1 8:0.936923401179
1 9:0.930170807533
2 3:0.752954410231
2 4:0.670468019737
2 5:0.775486319018
2 6:0.462042235889
2 7:0.462492172236
2 8:0.927168320577
2 9:0.913802434538
3 4:0.416493388389
3 5:0.693655150986
3 6:0.467271784458
3 7:0.449370519859
3 8:0.723136597155
3 9:0.696675291356
4 5:0.426610657921
4 6:0.35567154376
4 7:0.359501141289
4 8:0.691470892133
4 9:0.690840233461
5 6:0.547870478766
5 7:0.56020786014
5 8:0.653249693295
5 9:0.669477278018
6 7:0.0310854117566
6 8:0.625505031088
6 9:0.601956913658
7 8:0.627473949611
7 9:0.599258602385
8 9:0.160268533084
</hsp>