sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1QRT-B11-B42
X
>1QRS-B11-B42
X
>1GTS-B11-B42
X
>1QRU-B11-B42
X
>1DDY-A13-A30
X
>1NUJ-A7-G7
X
>1DDY-E13-E30
X
>1ET4-B13-B30
X
>1ET4-C13-C30
X
>1DDY-C13-C30
X
</seq>
<hsp>
0 1:0.216065902687
0 2:0.350060078239
0 3:0.611505307056
0 4:0.99999924756
0 5:0.582766481913
0 6:0.821356157345
0 7:0.729158108441
0 8:0.713940546151
0 9:0.911474755847
1 2:0.178844211492
1 3:0.429434522566
1 4:0.889636115424
1 5:0.435187567748
1 6:0.714198025217
1 7:0.610914407718
1 8:0.586500048267
1 9:0.794159280823
2 3:0.362086150697
2 4:0.884341443299
2 5:0.357628807275
2 6:0.705419728277
2 7:0.619555757358
2 8:0.566544106546
2 9:0.768377165453
3 4:0.641847679648
3 5:0.38358208769
3 6:0.4875946201
3 7:0.433470077243
3 8:0.371773789557
3 9:0.482751917394
4 5:0.939349470642
4 6:0.246704247865
4 7:0.519974674266
4 8:0.419073021947
4 9:0.311873117464
5 6:0.732214304017
5 7:0.593451252952
5 8:0.568758584842
5 9:0.74472442217
6 7:0.35585026278
6 8:0.20878979771
6 9:0.206215009101
7 8:0.208671942079
7 9:0.366137910417
8 9:0.285283525785
</hsp>