sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J00-A1228-A1261
X
>2J02-A1228-A1261
X
>3U5H-52653-52782
X
>3F1F-A2515-A2646
X
>3F1H-A2515-A2646
X
>3R8T-A2523-A2654
X
>1L9A-B37-B87
X
>1LNG-B25-B72
X
>3P22-A20-C20
X
</seq>
<hsp>
0 1:0.034242557014
0 2:0.758145060973
0 3:0.743955694298
0 4:0.723831859795
0 5:0.973628307164
0 6:0.983725966969
0 7:0.879791952952
0 8:0.811152650688
1 2:0.765133094774
1 3:0.755796099309
1 4:0.73660482992
1 5:0.988697129943
1 6:0.999988478925
1 7:0.873716506144
1 8:0.825308747265
2 3:0.255642548204
2 4:0.251626380708
2 5:0.425162702825
2 6:0.789476130818
2 7:0.590892005723
2 8:0.538740190046
3 4:0.0516820478141
3 5:0.34825887228
3 6:0.827018835836
3 7:0.776760367974
3 8:0.640090384496
4 5:0.366087602365
4 6:0.821565685502
4 7:0.766200792737
4 8:0.636001847459
5 6:0.690672039869
5 7:0.821591448511
5 8:0.584453211831
6 7:0.875743361647
6 8:0.478209267582
7 8:0.465889359514
</hsp>