sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UUA-A1228-A1261
X
>2QA4-0396-0418
X
>3OHZ-A417-A438
X
>2J03-A417-A438
X
>2J01-A417-A438
X
>3OHK-A417-A438
X
>1FJG-A1228-A1261
X
>3F1H-A424-A445
X
>3F1F-A424-A445
X
</seq>
<hsp>
0 1:0.999990877445
0 2:0.800572028316
0 3:0.86908062586
0 4:0.875702168346
0 5:0.976493643043
0 6:0.86451782503
0 7:0.990500729255
0 8:0.987893808194
1 2:0.790600416789
1 3:0.68378142156
1 4:0.67212743623
1 5:0.684292330722
1 6:0.862902611268
1 7:0.5673162486
1 8:0.567600734806
2 3:0.479290405948
2 4:0.475985232872
2 5:0.312501982074
2 6:0.308109529739
2 7:0.402939496503
2 8:0.400246424003
3 4:0.023155727946
3 5:0.42380678611
3 6:0.36111991345
3 7:0.404723347622
3 8:0.39374757371
4 5:0.415318894138
4 6:0.357440960792
4 7:0.391347135968
4 8:0.380461785034
5 6:0.341380672031
5 7:0.223025942208
5 8:0.221833687257
6 7:0.409310477024
6 8:0.404184290347
7 8:0.0154325045876
</hsp>