sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J00-A1023-A1189
X
>3KNH-A1014-A1180
X
>2J02-A1023-A1189
X
>3F1G-A1023-A1189
X
>3F1E-A1023-A1189
X
>1N32-A1023-A1189
X
>1XMQ-A1018-A1184
X
>2UUB-A1023-A1189
X
>2VQE-A1023-A1189
X
</seq>
<hsp>
0 1:0.70421191698
0 2:0.0154027454797
0 3:0.615966537648
0 4:0.616034009466
0 5:0.495717643598
0 6:0.519617131857
0 7:0.471715034464
0 8:0.336510791909
1 2:0.705873754767
1 3:0.224998967523
1 4:0.22427869243
1 5:0.585668342824
1 6:0.605581146853
1 7:0.999995450178
1 8:0.888332183975
2 3:0.617469064629
2 4:0.617442034564
2 5:0.492406153085
2 6:0.514818054131
2 7:0.468043403823
2 8:0.328191779053
3 4:0.0148571032786
3 5:0.578308732437
3 6:0.604644739495
3 7:0.844702189787
3 8:0.758951704165
4 5:0.572567539174
4 6:0.598878714165
4 7:0.845037828916
4 8:0.757233547574
5 6:0.141149963405
5 7:0.838100655686
5 8:0.575973203163
6 7:0.843297482749
6 8:0.571901952906
7 8:0.335327509415
</hsp>