sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3EGZ-B18-B55
X
>3CCJ-0395-0417
X
>3OHZ-A685-A808
X
>3OI1-A685-A808
X
>3OHK-A685-A808
X
>2J01-A685-A808
X
>3OHJ-A685-A808
X
>3F1H-A697-A820
X
>3F1F-A697-A820
X
</seq>
<hsp>
0 1:0.99999838587
0 2:0.831518014861
0 3:0.837072806895
0 4:0.821493952723
0 5:0.827468276927
0 6:0.799062741694
0 7:0.801732849094
0 8:0.815058448457
1 2:0.705954643519
1 3:0.701939550741
1 4:0.699019876472
1 5:0.676153880695
1 6:0.697065436961
1 7:0.761747742633
1 8:0.762210632477
2 3:0.0462852294633
2 4:0.160687306961
2 5:0.269014469786
2 6:0.162262655927
2 7:0.233221700454
2 8:0.24177006517
3 4:0.150574725943
3 5:0.253087232601
3 6:0.158820230666
3 7:0.225490162374
3 8:0.235268645131
4 5:0.191693232594
4 6:0.0613149799057
4 7:0.169852881374
4 8:0.177894725682
5 6:0.200906134345
5 7:0.133642464997
5 8:0.140038396907
6 7:0.170838371281
6 8:0.17533366371
7 8:0.0288313116151
</hsp>