sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A232-A428
X
>3CCS-02197-02210
X
>3CD6-02197-02210
X
>1G1X-J6-J17
X
>1XMQ-A700-A711
X
>1FJG-A700-A711
X
</seq>
<hsp>
0 1:0.999991128158
0 2:0.999791928556
0 3:0.932660473431
0 4:0.69520061378
0 5:0.804198838789
1 2:0.207238302062
1 3:0.79465346399
1 4:0.595957638775
1 5:0.554104620618
2 3:0.861034352632
2 4:0.637412833053
2 5:0.573063016754
3 4:0.632791737043
3 5:0.557760549027
4 5:0.198156465787
</hsp>