sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A1991-A2115
X
>2QEX-02062-02117
X
>1YHQ-02062-02117
X
>3CMA-02062-02117
X
>3CCQ-02062-02117
X
>1VQ5-02062-02117
X
>2OTJ-02062-02117
X
>1VQ7-02062-02117
X
>3G6E-02062-02117
X
>3OHZ-A1991-A2068
X
>3CCR-02062-02117
X
>3CCJ-02062-02117
X
</seq>
<hsp>
0 1:0.546978406672
0 2:0.476079453872
0 3:0.511305312355
0 4:0.472952314975
0 5:0.635371807179
0 6:0.588582557339
0 7:0.545074441361
0 8:0.580449991484
0 9:0.979348245294
0 10:0.619723719229
0 11:1.0
1 2:0.383903616367
1 3:0.166144892296
1 4:0.375890664968
1 5:0.219992133191
1 6:0.217505208621
1 7:0.293414829443
1 8:0.394043365134
1 9:0.77982184825
1 10:0.405445204211
1 11:0.830184331602
2 3:0.385325120959
2 4:0.333011363429
2 5:0.398359105994
2 6:0.285959436541
2 7:0.32409280958
2 8:0.275271117289
2 9:0.88728186162
2 10:0.414138785913
2 11:0.879346579168
3 4:0.331819703546
3 5:0.186943351375
3 6:0.253251923792
3 7:0.208097804151
3 8:0.334696835892
3 9:0.673070179265
3 10:0.358067950859
3 11:0.789382784774
4 5:0.351389637096
4 6:0.344066318024
4 7:0.253938017445
4 8:0.26161930165
4 9:0.721077321498
4 10:0.285712521182
4 11:0.747971347326
5 6:0.217204303947
5 7:0.187599828435
5 8:0.302634523366
5 9:0.640129791055
5 10:0.311313282034
5 11:0.752159328406
6 7:0.243111785574
6 8:0.301744603523
6 9:0.778157173002
6 10:0.316451326518
6 11:0.72519527901
7 8:0.161871086572
7 9:0.610597262054
7 10:0.202635555268
7 11:0.707674390578
8 9:0.668846285422
8 10:0.22562410517
8 11:0.735505747263
9 10:0.655335667106
9 11:0.903375212717
10 11:0.54772913097
</hsp>