sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQK-02486-02457
X
>3CME-02486-02457
X
>3I56-02486-02457
X
>3G6E-02486-02457
X
>3CCE-02486-02457
X
>1FFK-02439-02410
X
>3CC4-02486-02457
X
>1VQ4-02486-02457
X
>1JJ2-02486-02457
X
>1Q81-A2486-A2457
X
</seq>
<hsp>
0 1:0.493170324108
0 2:0.682711148807
0 3:0.658425635241
0 4:0.664535925743
0 5:0.6996811234
0 6:0.743528630708
0 7:0.742613389381
0 8:0.77190616006
0 9:0.88102984781
1 2:0.810957177586
1 3:0.681215468347
1 4:0.730022017273
1 5:0.815820576742
1 6:0.802482477344
1 7:0.879035233779
1 8:0.898011390595
1 9:1.0
2 3:0.210193415398
2 4:0.195042144432
2 5:0.199990270902
2 6:0.178386003744
2 7:0.240302044404
2 8:0.23626969036
2 9:0.392805015304
3 4:0.104203607129
3 5:0.224851148454
3 6:0.125266590816
3 7:0.274652510394
3 8:0.258192303621
3 9:0.393919891871
4 5:0.230950714872
4 6:0.109083516181
4 7:0.24261464235
4 8:0.201621193889
4 9:0.343775620284
5 6:0.203308712162
5 7:0.141718356935
5 8:0.19586133282
5 9:0.289670441568
6 7:0.208659081233
6 8:0.164556561501
6 9:0.310347529305
7 8:0.124815693275
7 9:0.202480970273
8 9:0.174584694821
</hsp>