sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YJ9-01597-01598
X
>2OTL-01597-01598
X
>2J02-A1125-A1126
X
>1YJ9-01775-01776
X
>3CC4-01775-01776
X
>1VQ5-01775-01776
X
>1Q86-A1775-A1776
X
>3Q50-A5-A6
X
>3CXC-01775-01776
X
>1VQM-02431-02432
X
</seq>
<hsp>
0 1:0.157305734374
0 2:0.72933900294
0 3:0.813495800887
0 4:0.942989823338
0 5:0.835673683348
0 6:0.832851180508
0 7:0.817006985052
0 8:0.8889664008
0 9:0.90299377701
1 2:0.798085979463
1 3:0.865449933567
1 4:0.999994171339
1 5:0.894972290519
1 6:0.881809737098
1 7:0.838843787689
1 8:0.928872775393
1 9:0.936704739164
2 3:0.258156423225
2 4:0.329563602989
2 5:0.236684876334
2 6:0.243140430436
2 7:0.400926145511
2 8:0.280702508476
2 9:0.415176300369
3 4:0.19686443855
3 5:0.203088843605
3 6:0.0935364169284
3 7:0.254064663147
3 8:0.145759098486
3 9:0.303430107492
4 5:0.16780944752
4 6:0.161159847218
4 7:0.30816389577
4 8:0.174086344758
4 9:0.232739819426
5 6:0.179245428989
5 7:0.31326424104
5 8:0.200959902338
5 9:0.274867923728
6 7:0.258635163706
6 8:0.0870552389472
6 9:0.23979136606
7 8:0.267258019127
7 9:0.261541401977
8 9:0.244957108058
</hsp>