sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHK-A1633-A1635
X
>1Q82-A125-A127
X
>1Q86-A125-A127
X
>1VQ9-0125-0127
X
>3CD6-0125-0127
X
>1YHQ-0125-0127
X
>3CMA-0125-0127
X
>3CCE-0125-0127
X
>3CCR-0125-0127
X
</seq>
<hsp>
0 1:0.77279385833
0 2:0.884750654354
0 3:0.780274217948
0 4:0.819889741074
0 5:0.830381208732
0 6:0.914940211343
0 7:0.944067937795
0 8:0.999999461704
1 2:0.154908753465
1 3:0.204081771345
1 4:0.206874156979
1 5:0.2243767003
1 6:0.336686342745
1 7:0.437940612946
1 8:0.423913467
2 3:0.180990992906
2 4:0.148903571416
2 5:0.212197998555
2 6:0.25203189272
2 7:0.360031934881
2 8:0.317883361224
3 4:0.0757152083646
3 5:0.159749225023
3 6:0.192521999016
3 7:0.273087527852
3 8:0.313298056649
4 5:0.154384212504
4 6:0.171216712632
4 7:0.253253705111
4 8:0.289069323813
5 6:0.161838355946
5 7:0.250437358735
5 8:0.285955711418
6 7:0.126049386534
6 8:0.177543852606
7 8:0.212299117232
</hsp>