sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A2107-A2108
X
>3U5D-1497-1498
X
>1FFK-02669-02670
X
>3CXC-02717-02718
X
>1L8V-B102-B103
X
>1L8V-A102-A103
X
>1FJG-A683-A684
X
>3U5F-61548-61549
X
>3F1E-A683-A684
X
>3F1G-A683-A684
X
>3OHK-A1733-A1734
X
>2UUB-A683-A684
X
</seq>
<hsp>
0 1:0.843717598794
0 2:0.738920106268
0 3:0.767743198332
0 4:0.999999788132
0 5:0.992341416491
0 6:0.796196534277
0 7:0.7009055496
0 8:0.790695213515
0 9:0.792814295319
0 10:0.853429125092
0 11:0.717980566794
1 2:0.319249890568
1 3:0.342885090911
1 4:0.37136080434
1 5:0.372209641933
1 6:0.443017140896
1 7:0.370703020792
1 8:0.428849071007
1 9:0.425705627256
1 10:0.24017805218
1 11:0.312354535206
2 3:0.231491743604
2 4:0.580085855884
2 5:0.576986488621
2 6:0.591333340931
2 7:0.43842402223
2 8:0.555591869681
2 9:0.55676077461
2 10:0.294433227699
2 11:0.433877832946
3 4:0.452406512689
3 5:0.448575382429
3 6:0.455038368979
3 7:0.296258167652
3 8:0.462070773019
3 9:0.464264452637
3 10:0.170548698123
3 11:0.351313185085
4 5:0.0136259673428
4 6:0.273916291108
4 7:0.366255660325
4 8:0.304828417343
4 9:0.302841746324
4 10:0.334260717071
4 11:0.31864379768
5 6:0.265864447157
5 7:0.361226082536
5 8:0.295257980322
5 9:0.293494098046
5 10:0.333217593221
5 11:0.311911308992
6 7:0.224397683355
6 8:0.170073414511
6 9:0.169785349375
6 10:0.403846361573
6 11:0.199440541756
7 8:0.289327820179
7 9:0.289140059365
7 10:0.289952755275
7 11:0.179969800591
8 9:0.0144661143899
8 10:0.427523368668
8 11:0.217664876861
9 10:0.427308445957
9 11:0.216312258186
10 11:0.295765725875
</hsp>