sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A164-A165
X
>3U5D-135-136
X
>3R8T-A2578-A2579
X
>3CPW-01139-01140
X
>2OTJ-01139-01140
X
>3GES-A36-A37
X
>2QEX-01139-01140
X
>3U5B-21734-21735
X
>1YHQ-01139-01140
X
>3CCV-01139-01140
X
</seq>
<hsp>
0 1:0.548638522101
0 2:0.245201959323
0 3:0.973569569034
0 4:0.9245330723
0 5:0.61803387857
0 6:0.727854216861
0 7:0.740907130467
0 8:0.872344397706
0 9:0.741516310574
1 2:0.573559759715
1 3:0.99999540434
1 4:0.893760225391
1 5:0.777942699586
1 6:0.786946403965
1 7:0.741161793335
1 8:0.893343859038
1 9:0.669997990156
2 3:0.948038554921
2 4:0.886422347763
2 5:0.62554296413
2 6:0.693723207416
2 7:0.732006654605
2 8:0.837622275764
2 9:0.716911330935
3 4:0.255651129553
3 5:0.596057664817
3 6:0.395641968639
3 7:0.738322040139
3 8:0.437053704421
3 9:0.571225602631
4 5:0.61789738018
4 6:0.393952035809
4 7:0.736780435107
4 8:0.428856724148
4 9:0.51351306655
5 6:0.511795165887
5 7:0.317704765564
5 8:0.350995330082
5 9:0.368675723444
6 7:0.634428855048
6 8:0.432422913272
6 9:0.417743161563
7 8:0.411694007181
7 9:0.304669361354
8 9:0.266759418584
</hsp>