sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YJN-0607-0617
X
>1YIT-0607-0617
X
>2OTJ-0607-0617
X
>3CCE-0607-0617
X
>3CCJ-0607-0617
X
>3CCU-0607-0617
X
>3CC4-0607-0617
X
>1VQ6-0607-0617
X
>1K8A-A607-A617
X
</seq>
<hsp>
0 1:0.450806781286
0 2:0.819177716763
0 3:0.856641598656
0 4:0.621547661652
0 5:0.688993842304
0 6:0.607480791907
0 7:0.770043543267
0 8:0.69215509937
1 2:0.427700362129
1 3:0.791956766727
1 4:0.572593014928
1 5:0.461578820398
1 6:0.295804198437
1 7:0.499226554541
1 8:0.592767881597
2 3:0.758321333367
2 4:0.6133302602
2 5:0.512432793065
2 6:0.432024732454
2 7:0.491864293071
2 8:0.811609428078
3 4:0.624472136478
3 5:0.500769745087
3 6:0.713133204797
3 7:0.593759396346
3 8:1.0
4 5:0.574842133481
4 6:0.549276309691
4 7:0.52458061146
4 8:0.678281426247
5 6:0.395612533659
5 7:0.337839412431
5 8:0.681696486484
6 7:0.357018714162
6 8:0.468861780887
7 8:0.593663212255
</hsp>