sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1398-A1399
X
>3R8S-A1435-A1436
X
>1SDR-B9-B10
X
>3U5H-50-51
X
>1N8R-A2122-A2123
X
>2NZ4-R113-R114
X
>3CME-02122-02123
X
>3U5H-51058-51059
X
>1VQK-02122-02123
X
>3CC2-02574-02575
X
</seq>
<hsp>
0 1:0.802401324104
0 2:0.546648768233
0 3:0.61321485725
0 4:0.747329191146
0 5:0.53145310465
0 6:0.768371382683
0 7:0.607366908484
0 8:0.6784374431
0 9:0.956260512445
1 2:0.800194186699
1 3:0.746817233222
1 4:0.847462806973
1 5:0.746302128933
1 6:0.518926664392
1 7:0.802103146053
1 8:0.795681896138
1 9:1.0
2 3:0.21833621737
2 4:0.811193835656
2 5:0.418104052049
2 6:0.620783383025
2 7:0.487828343161
2 8:0.555318828202
2 9:0.704671601122
3 4:0.762197428268
3 5:0.376777286866
3 6:0.533091221635
3 7:0.511654274644
3 8:0.490600432445
3 9:0.58856442262
4 5:0.604089872981
4 6:0.65669783165
4 7:0.581172149468
4 8:0.577611111631
4 9:0.880758407719
5 6:0.428735508032
5 7:0.277883937272
5 8:0.299382638575
5 9:0.486802589417
6 7:0.47556773943
6 8:0.36177980948
6 9:0.633962969936
7 8:0.365090863867
7 9:0.572668448459
8 9:0.572004202661
</hsp>