sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A632-A633
X
>3U5F-61247-61248
X
>1KD1-A198-A199
X
>3OGE-A1098-A1099
X
>3U5F-6829-6830
X
>3U5D-11014-11015
X
>3OI0-A1098-A1099
X
>3U5F-61243-61244
X
>3R8N-A675-A676
X
>2QA4-01961-01962
X
</seq>
<hsp>
0 1:0.719698480375
0 2:0.834944716277
0 3:0.808447421083
0 4:0.624581064008
0 5:1.0
0 6:0.644721621311
0 7:0.793301170067
0 8:0.902336436335
0 9:0.879296935304
1 2:0.267928829178
1 3:0.795179085567
1 4:0.848718379552
1 5:0.68062136259
1 6:0.704393986648
1 7:0.696336725326
1 8:0.833268391441
1 9:0.710822038127
2 3:0.65251199331
2 4:0.790332411422
2 5:0.596438950193
2 6:0.63162068839
2 7:0.591433391127
2 8:0.680841422591
2 9:0.576650969387
3 4:0.349877918182
3 5:0.650374109977
3 6:0.298912495393
3 7:0.413619968346
3 8:0.215041476884
3 9:0.314035715138
4 5:0.718298382122
4 6:0.188899884759
4 7:0.532531346933
4 8:0.459200795996
4 9:0.45473058904
5 6:0.554677911536
5 7:0.648858403791
5 8:0.676611191589
5 9:0.414049853997
6 7:0.43673530538
6 8:0.398009511754
6 9:0.308875904411
7 8:0.34489567062
7 9:0.337080164344
8 9:0.290296919974
</hsp>