sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1S72-01128-01129
X
>1NJI-A1128-A1129
X
>1Q86-A1128-A1129
X
>3CPW-01128-01129
X
>1VQ5-01128-01129
X
>2OTJ-01128-01129
X
>3CCU-01128-01129
X
>1K9M-A2427-A2428
X
>1K8A-A2427-A2428
X
>1KD1-A2427-A2428
X
</seq>
<hsp>
0 1:0.464285726119
0 2:0.230543754821
0 3:0.303366611296
0 4:0.506317161202
0 5:0.75774731388
0 6:0.523245212814
0 7:0.933748067938
0 8:0.911508581431
0 9:0.935063092159
1 2:0.271744444835
1 3:0.205026683982
1 4:0.820163881499
1 5:0.999995523919
1 6:0.821879276031
1 7:0.912150146883
1 8:0.909574185475
1 9:0.906174495991
2 3:0.0884524109376
2 4:0.592657814581
2 5:0.776178706213
2 6:0.579900071372
2 7:0.828682718931
2 8:0.823297261582
2 9:0.831085360925
3 4:0.638509284204
3 5:0.814500821597
3 6:0.646177492373
3 7:0.835346157143
3 8:0.833562964437
3 9:0.832273801325
4 5:0.502213073289
4 6:0.367315962506
4 7:0.856834969146
4 8:0.845478370348
4 9:0.810132119802
5 6:0.511678509858
5 7:0.955086715223
5 8:0.998141019804
5 9:0.949909934169
6 7:0.780901122573
6 8:0.757086725266
6 9:0.767089126179
7 8:0.18221122837
7 9:0.171660633688
8 9:0.201538067853
</hsp>