sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YHQ-0720-0721
X
>3BNQ-C0-C1
X
>1VQK-0720-0721
X
>1NJI-A720-A721
X
>1VQM-0720-0721
X
>1VQP-0720-0721
X
>1VQN-0720-0721
X
>1VQ4-0720-0721
X
>2OTL-0720-0721
X
</seq>
<hsp>
0 1:0.877017333981
0 2:0.289706464442
0 3:0.16278119731
0 4:0.427787745026
0 5:0.294971075443
0 6:0.340015621468
0 7:0.285693802032
0 8:0.31690690517
1 2:0.914684099123
1 3:0.826301604159
1 4:0.973396165411
1 5:0.953256637368
1 6:0.999997169034
1 7:0.84606103972
1 8:0.938295015191
2 3:0.355039491196
2 4:0.243290789784
2 5:0.25831541493
2 6:0.225856007007
2 7:0.250328226667
2 8:0.452832027848
3 4:0.491038759771
3 5:0.369670588546
3 6:0.404999760852
3 7:0.241686206614
3 8:0.239504613488
4 5:0.185417066385
4 6:0.148193455281
4 7:0.342365132842
4 8:0.524570157409
5 6:0.105881049075
5 7:0.292928927262
5 8:0.40995645586
6 7:0.297930274416
6 8:0.448130036974
7 8:0.258041994958
</hsp>