sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2GIC-R37-R38
X
>3CCJ-097-098
X
>3CME-097-098
X
>3CCV-097-098
X
>1YJW-097-098
X
>3CCS-097-098
X
>3CXC-097-098
X
>1YIJ-097-098
X
>1K8A-A97-A98
X
</seq>
<hsp>
0 1:1.0
0 2:0.745059452726
0 3:0.984408581705
0 4:0.899652322283
0 5:0.953065770036
0 6:0.874933223745
0 7:0.949395280902
0 8:0.940505675073
1 2:0.418330387245
1 3:0.311407592851
1 4:0.31905734353
1 5:0.295091134452
1 6:0.339225348471
1 7:0.339387775353
1 8:0.375931899348
2 3:0.268662631382
2 4:0.226946724602
2 5:0.236983515403
2 6:0.167713669937
2 7:0.240579383696
2 8:0.216779448781
3 4:0.201437376831
3 5:0.101688211613
3 6:0.142202108728
3 7:0.151987954769
3 8:0.113035327923
4 5:0.151876215143
4 6:0.196595356897
4 7:0.121059698512
4 8:0.163850998947
5 6:0.159192906334
5 7:0.139553327849
5 8:0.113875260825
6 7:0.142286504919
6 8:0.121452656716
7 8:0.101403917556
</hsp>