sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1MMS-D31-D32
X
>1YJN-02438-02439
X
>1YJW-02438-02439
X
>1K8A-A2438-A2439
X
>3CD6-02438-02439
X
>2OTL-02438-02439
X
>3CPW-02438-02439
X
>3CCU-02438-02439
X
</seq>
<hsp>
0 1:0.969314720911
0 2:0.999999823098
0 3:0.894947725993
0 4:0.916965361857
0 5:0.921589930706
0 6:0.925243257589
0 7:0.964056839634
1 2:0.139305994949
1 3:0.172599944717
1 4:0.161437508779
1 5:0.131170305056
1 6:0.208630899989
1 7:0.176837056668
2 3:0.138469994572
2 4:0.12582730431
2 5:0.144649847406
2 6:0.167468471781
2 7:0.161029755833
3 4:0.133382005413
3 5:0.109246084575
3 6:0.148884702466
3 7:0.146117915055
4 5:0.135933723479
4 6:0.103617684209
4 7:0.123665964965
5 6:0.138318454295
5 7:0.153250201964
6 7:0.113884249281
</hsp>