sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3I56-02245-02260
X
>1VQ5-02245-02260
X
>1YJ9-02245-02260
X
>1VQ4-02245-02260
X
>1VQ7-02245-02260
X
>1YI2-02245-02260
X
>1VQ6-02245-02260
X
>1S72-02245-02260
X
>1K9M-A2245-A2260
X
</seq>
<hsp>
0 1:0.364839465216
0 2:0.79183122397
0 3:0.413828671829
0 4:0.580564025121
0 5:0.736896399687
0 6:0.659606800976
0 7:1.0
0 8:0.942231333774
1 2:0.602528046719
1 3:0.323684463877
1 4:0.300889461812
1 5:0.538213925427
1 6:0.467790937864
1 7:0.804851131674
1 8:0.774857557192
2 3:0.614146448976
2 4:0.556083062131
2 5:0.224618113785
2 6:0.370862673534
2 7:0.629498948706
2 8:0.48015705447
3 4:0.274566030313
3 5:0.484214528898
3 6:0.514773157075
3 7:0.641433735029
3 8:0.653620346308
4 5:0.448640217137
4 6:0.498407786453
4 7:0.589165423393
4 8:0.637411643058
5 6:0.3177335756
5 7:0.489107308736
5 8:0.39312839305
6 7:0.576934604264
6 8:0.428186465118
7 8:0.278574810973
</hsp>