sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FJG-A1015-A976
X
>1XMQ-A356-A384
X
>2UUA-A356-A384
X
>2UUB-A356-A384
X
>2UXC-A356-A384
X
>1N32-A356-A384
X
>2VQE-A356-A384
X
>1FJG-A356-A384
X
</seq>
<hsp>
0 1:0.999995779466
0 2:0.96713449046
0 3:0.946829985107
0 4:0.993421520351
0 5:0.809633512182
0 6:0.928716728072
0 7:0.981393102445
1 2:0.173105457646
1 3:0.166007151062
1 4:0.22314986239
1 5:0.243990532347
1 6:0.175349963302
1 7:0.207332076171
2 3:0.0939840710135
2 4:0.275579889198
2 5:0.265436532769
2 6:0.169312789845
2 7:0.196044036759
3 4:0.239674053264
3 5:0.228924395514
3 6:0.146676315371
3 7:0.16693835712
4 5:0.232003837924
4 6:0.161219799226
4 7:0.159787930862
5 6:0.153136879667
5 7:0.198417561946
6 7:0.0836654777045
</hsp>